FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index16_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18866789 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 4914085 | 3.029893 | 4.7548738 | 2 |
| GAAGA | 3955925 | 2.548608 | 5.000464 | 2 |
| CCAGG | 3919630 | 2.5383978 | 5.186047 | 1 |
| CTTCT | 4127890 | 2.5161757 | 5.6086206 | 1 |
| CCTGG | 3891255 | 2.5060737 | 5.9427032 | 1 |
| CTGGA | 3737000 | 2.4004762 | 8.89283 | 1 |
| CTGCT | 3731080 | 2.337723 | 5.206343 | 1 |
| TCCAG | 3681405 | 2.3194366 | 5.7379045 | 2 |
| CTCCT | 3702455 | 2.275322 | 7.7259064 | 1 |
| CTGGG | 3431875 | 2.253414 | 8.452211 | 1 |
| CAGGA | 3423085 | 2.2110698 | 5.508483 | 1 |
| CTTCA | 3571700 | 2.1892645 | 5.8491783 | 1 |
| CTCCA | 3488175 | 2.1555684 | 8.341733 | 1 |
| CCCAG | 3388210 | 2.1521847 | 7.3587847 | 1 |
| CAGAA | 3312955 | 2.0934622 | 5.1069946 | 1 |
| CTCTG | 3194255 | 2.001373 | 6.4441895 | 1 |
| CTGGC | 2893985 | 1.8638048 | 5.567891 | 1 |
| TGGAA | 2884750 | 1.8482157 | 5.210347 | 2 |
| CTGAA | 2930335 | 1.841435 | 5.591223 | 1 |
| CTCAG | 2738855 | 1.7255913 | 6.3014627 | 1 |
| CTTTG | 2733350 | 1.6986871 | 5.041107 | 1 |
| CTGGT | 2562190 | 1.6367229 | 5.1668544 | 1 |
| CTTGG | 2556230 | 1.6329159 | 5.3968406 | 1 |
| CTCCC | 2490785 | 1.5432262 | 5.0937114 | 1 |